#CHARMSTONE RSTUDIO ANALYSIS CODE#

To run a block of code, select it and then Run. (This shortcut can also be seen by hovering the mouse over the button). hit Ctrl-Enter in Windows or Linux or Command-Enter on OS X. select вЂњRun LinesвЂќ from the вЂњCodeвЂќ menu, or 3.

click on the Run button just above the editor panel, or 2. There are buttons, menu choices, and keyboard shortcuts.

#CHARMSTONE RSTUDIO ANALYSIS CODE#

RStudio offers you great flexibility in running code from within the editor window.

You will be able to run the file you create from within RStudio or using RвЂ™s source() function.

This is a great way to start all your code is saved for later.

R file and use RStudioвЂ™s command / short cut to push current line, selected lines or modified lines to the interactive R console.

This works well when doing small tests and initially starting off.

Test and play within the interactive R console then copy code into a.

There are two main ways one can work within RStudio. Once you open files, such as R scripts, an editor panel will also open in the top left.

Files/Plots/Packages/Help/Viewer (tabbed in lower right).

Environment/History (tabbed in upper right).

The interactive R console (entire left).

When you first open RStudio, you will be greeted by three panels: It provides a built in editor, works on all platforms (including on servers) and provides many advantages such as integration with version control and project management. WeвЂ™ll be using RStudio: a free, open source R integrated development environment. RNA-seq analysis in R R for RNAseq Introduction to RStudio

Charmstone rstudio analysis